# Overview

# Tutorials

# Tutorial Slides

These tutorial slides contain annoted screenshots to walk you through using the cBioPortal site.

1. Single Study Exploration Google slides | PDF
2. Single Study Query Google slides | PDF
3. Patient View Google slides | PDF
4. Virtual Studies Google slides | PDF
5. Onco Query Language (OQL) Google slides | PDF
6. Group Comparison Google slides | PDF
7. Pathways Google slides | PDF

# Webinar Recordings

Recordings of live webinars from April & May 2020

1. Introduction to cBioPortal youtube.com | bilibili.com | Download PDF | View slides
2. Mutation Details & Patient View youtube.com | bilibili.com | Download PDF | View slides
3. Expression Data Analysis youtube.com | bilibili.com | Download PDF | View slides
4. Group Comparison youtube.com | bilibili.com | Download PDF | View slides
5. API & R Client youtube.com | bilibili.com | Download PDF | View slides | Workshop code

# How-To Videos

Short videos that show how to perform specific analyses or how to use specific pages.

1. Comparing samples based on expression level of a gene youtube.com
2. Proteomic profiles in cBioPortal - An example based on cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) youtube.com
3. Filtering and adding clinical data to Mutations tab youtube.com
4. Exploring the longitudinal evolution of individual patients youtube.com
5. Using Onco Query Language (OQL) to query based on the expression level of genes youtube.com
6. How to explore the data in a study youtube.com
7. How to run a query for genes of interest youtube.com
8. How to download data youtube.com
9. Navigating AACR GENIE - Biopharma Collaborative (BPC) dataset youtube.com

# Documentation

• Frequently Asked Questions FAQ
• Onco Query Language OQL

# Publications

• de Bruijn et al. Cancer Research 2023 PubMed
• Cerami et al. Cancer Discovery 2012 PubMed
• Gao et al. Science Signaling 2013 PubMed

# Tutorials by others

• cBioPortal Tutorial Series by Jackson Laboratory youtube.com
• Using the Cancer Digital Slide Archive in cBioPortal by Nicole M. Rivera Acevedo youtube.com (English) | youtube.com (Spanish)
• Visualizing and Downloading RNASeq data from cBioPortal by Farhan Haq youtube.com