cBioPortal
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README
1. General
News
Frequently Asked Questions
About Us
List of RFCs
2.1 Deployment
Architecture overview
Hardware Requirements
2.1.1 Deploy with Docker (Recommended)
Deploy with Docker
Import data with Docker
Example Commands
Authenticating and Authorizing Users using Keycloak in Docker
2.1.2 Deploy without Docker
Software Requirements
Pre-Build Steps
Building from Source
Importing the Seed Database
Deploying the Web Application
Loading a Sample Study
2.2 Authorization and Authentication
User Authorization
Authenticating Users via SAML
Authenticating Users via LDAP
Authenticating and Authorizing Users via Keycloak
Authenticating Users via Tokens
2.3 Customization
Customizing your cBioPortal Instance via portal.properties
More portal.properties Settings
Configuring Caching Behavior
How does the study view organize the charts
Utilize priority setting from database to visualize charts
2.4 Integration with Other Webservices
OncoKB Data Access
3. cBioPortal Maintenance
Updating your cBioPortal Database Scheme
Update genes and gene aliases
4. Development
Feature Development Guide
cBioPortal Entity-relationship Diagram
Build cBioPortal with a different frontend version
Session Service
Manual test cases
Release Procedure
Deployment Procedure
5.1 Data Loading
Data Loading Overview
5.2 Datasets
Downloads
6. Web API and Clients
API and API Clients
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README
Welcome to the documentation for cBioPortal! Below you can find an index of all available documentation to help you to deploy and maintain a local instance of cBioPortal, as well as information on how to upload data. Specific pages are also available for developers. For details on contributing code changes and pull-requests to cBioPortal, please see our CONTRIBUTING Doc.
We also maintain an active list of RFCs (Requests for Comments) where we describe new features and solicit community feedback.

1. General

2. cBioPortal Deployment

2.1 Deployment

2.1.2 Deploy without Docker

2.2 Authorization and Authentication

2.3 Customization

2.4 Integration with Other Webservices

3. cBioPortal Maintenance

4. Development

5. Data Loading

5.1 Data Loading

5.2 Datasets

6. Web API and Clients

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Contents
1. General
2. cBioPortal Deployment
2.1 Deployment
2.1.1 Deploy with Docker (Recommended)
2.1.2 Deploy without Docker
2.2 Authorization and Authentication
2.3 Customization
2.4 Integration with Other Webservices
3. cBioPortal Maintenance
4. Development
5. Data Loading
5.1 Data Loading
5.2 Datasets
6. Web API and Clients