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cBioPortal Database Versioning
We follow the following logic when deciding how/when to increment the version of cBioPortal database. It's a complete modification of semantic versioning (MAJOR.MINOR.PATCH) more suitable for our purposes:
MAJOR : A non-backward compatible significant change in the database. Which requires the maintainer to reload and re-import all studies in the database entirely.
MINOR : Including deleting, renaming tables or columns, or changing constraints
Delete a table
DROP TABLE t ;
Drop column c from the table
ALTER TABLE t DROP COLUMN c ;
Add a constraint
ALTER TABLE t ADD constraint;
Drop a constraint
ALTER TABLE t DROP constraint;
Rename a table from t1 to t2
ALTER TABLE t1 RENAME TO t2;
Rename column c1 to c2
ALTER TABLE t1 RENAME c1 TO c2 ;
PATCH : Changes that don't change existing database schemes but add new tables or columns, manipulating data.
Create a new table
CREATE TABLE t (
id INT PRIMARY KEY,
);
Add a new column to the table
ALTER TABLE t ADD column;
Remove all data in a table
TRUNCATE TABLE t;
Delete data from a table:
DELETE from TABLE t;
Update data in a table:
UPDATE TABLE t SET ...;
Insert multiple rows into a table
INSERT INTO t(column_list)
VALUES (value_list),
(value_list), …;