cBioPortal
cBioPortal
Introduction
1. General
News
Frequently Asked Questions
About Us
List of RFCs
2.1 Deployment
Architecture overview
Hardware Requirements
2.1.1 Deploy with Docker (Recommended)
Deploy with Docker
Example Commands
Authenticating and Authorizing Users using Keycloak in Docker
2.1.2 Deploy without Docker
Software Requirements
Pre-Build Steps
Building from Source
Importing the Seed Database
Deploying the Web Application
Loading a Sample Study
2.2 Authorization and Authentication
User Authorization
Authenticating Users via SAML
Authenticating Users via LDAP
Authenticating and Authorizing Users via Keycloak
Authenticating Users via Tokens
2.3 Customization
Customizing your cBioPortal Instance via portal.properties
More portal.properties Settings
Configuring Caching Behavior
2.4 Integration with Other Webservices
OncoKB Data Access
3. cBioPortal Maintenance
Updating your cBioPortal Database Scheme
Update genes and gene aliases
4. Development
cBioPortal Entity-relationship Diagram
Using the Data Manager to Get Data and Set Session Parameters
Accessing Services via the Web-API
Providing cBioPortal Parameters
Manual test cases
Build cBioPortal with a different frontend version
Release Procedure
Deployment Procedure
5.1 Data Loading
Data Loading Overview
5.2 Datasets
Downloads
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cBioPortal Entity-relationship Diagram

​cBioPortal ER Diagram - PDF Version​

cBioPortal ER Diagram
3. cBioPortal Maintenance - Previous
Update genes and gene aliases
Next - 4. Development
Using the Data Manager to Get Data and Set Session Parameters
Last updated 1 year ago
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