cBioPortal
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README
1. General
News
Frequently Asked Questions
About Us
List of RFCs
2.1 Deployment
Architecture overview
Hardware Requirements
2.1.1 Deploy with Docker (Recommended)
Deploy with Docker
Import data with Docker
Example Commands
Authenticating and Authorizing Users using Keycloak in Docker
2.1.2 Deploy without Docker
Software Requirements
Pre-Build Steps
Building from Source
Importing the Seed Database
Deploying the Web Application
Loading a Sample Study
2.2 Authorization and Authentication
User Authorization
Authenticating Users via SAML
Authenticating Users via LDAP
Authenticating and Authorizing Users via Keycloak
Authenticating Users via Tokens
2.3 Customization
Customizing your cBioPortal Instance via portal.properties
More portal.properties Settings
Configuring Caching Behavior
How does the study view organize the charts
Utilize priority setting from database to visualize charts
2.4 Integration with Other Webservices
OncoKB Data Access
3. cBioPortal Maintenance
Updating your cBioPortal Database Scheme
Update genes and gene aliases
4. Development
Feature Development Guide
cBioPortal Entity-relationship Diagram
Build cBioPortal with a different frontend version
Session Service
Manual test cases
Release Procedure
Deployment Procedure
5.1 Data Loading
Data Loading Overview
5.2 Datasets
Downloads
6. Web API and Clients
API and API Clients
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Build cBioPortal with a different frontend version
Maven will build cBioPortal with a cBioPortal-frontend version and git repository url as determined by respectively the frontend.version and frontend.groupId parameters in the root POM.xml.
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<properties>
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<frontend.version>v2.1.0_/frontend.version>
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<frontend.groupId>com.github.cbioportal</frontend.groupId>
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...
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To build cBioPortal with a different frontend version different values for frontend.version and frontend.groupId parameters can be specified as part of the maven install command. For example:
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mvn clean -DskipTests install -Dfrontend.version=93d9cbcbf007ff620ab51ef5af5927a0eb1ebed4 -Dfrontend.groupId=com.github.thehyve
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Remarks:
    The frontend.version parameter allows release tags (e.g. 'v2.1.0') and commit sha-hashes (e.g., '93d9cbcb').
    The frontend.groupId is a reversed, dot-separated derivative of the git url. Git repository location github.com/cbioportal is represented by the com.github.cbioportal groupId.
4. Development - Previous
cBioPortal Entity-relationship Diagram
Next - 4. Development
Session Service
Last modified 2yr ago
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