Using OncoKB does not require a data access token. But the instance you are connecting to only includes biological information by default. If you want to include tumor type summary, therapeutic levels and more, please consider obtaining a license from OncoKB.
Please review OncoKB terms
Please request for data access
You can find your token in your Account Settings after login.
Following properties can be edited in the
portal.properties file or set in system variables if you are using docker.
show.oncokb should be set to
oncokb.token should be set to a valid OncoKB access token value
oncokb.public_api.url should be set to
Thank you for supporting future OncoKB development.
If you want to include the MSI-H and TMB-H annotation on patient view, please follow the instruction to import required clinical data. For MSI-H, a clinical attribute MSI_TYPE with value Instable is required. For TMB-H, a clinical attribute TMB_SCORE with value >=10 is required.
portal.properties or in system variables if you are using docker.